Task

chr15:80710788-81694891

0c57f8a9-bf99-4587-8f6e-8f74fbb1984f
Submitted at: June 26, 2024, 10:03 a.m.
Task status: Finished
Number of beads: 984
Number of restraints: 15
Initial Structure type: pure random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 432.829 kJ/mol
Beads per interaction: 65.600 beads/interaction
base pairs per interaction: 65 607 bp/interaction
Region: chr15:80710788-81694891
Region length: 984 104 bp
Effective resolution: 1000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 11 190
  • 11 280
  • 11 502
  • 11 772
  • 11 900
  • 190 280
  • 190 502
  • 190 772
  • 190 900
  • 280 502
  • 280 772
  • 280 900
  • 502 772
  • 502 900
  • 772 900
Interactions 
  • chr15	80720800	80721800	chr15	80900000	80901000	5
  • chr15	80720800	80721800	chr15	80990013	80991013	5
  • chr15	80720800	80721800	chr15	81211991	81212991	5
  • chr15	80720800	80721800	chr15	81482190	81483190	5
  • chr15	80720800	80721800	chr15	81609771	81610771	5
  • chr15	80900000	80901000	chr15	80990013	80991013	5
  • chr15	80900000	80901000	chr15	81211991	81212991	5
  • chr15	80900000	80901000	chr15	81482190	81483190	5
  • chr15	80900000	80901000	chr15	81609771	81610771	5
  • chr15	80990013	80991013	chr15	81211991	81212991	5
  • chr15	80990013	80991013	chr15	81482190	81483190	5
  • chr15	80990013	80991013	chr15	81609771	81610771	5
  • chr15	81211991	81212991	chr15	81482190	81483190	5
  • chr15	81211991	81212991	chr15	81609771	81610771	5
  • chr15	81482190	81483190	chr15	81609771	81610771	5
Interactive structure preview
genome coordinates
80710788
80907608
81104429
81301249
81498070
81694891
1
99
197
295
394
492
590
689
787
885
984
model coordinates
Distance map distance map