Task

Example - Genomic coordinates

33557067-4d9b-4b06-b52b-2203f3dd2eaa
Submitted at: July 29, 2024, 2:04 a.m.
Task status: Finished
Number of beads: 300
Number of restraints: 5
Initial Structure type: self-avoiding random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 120.451 kJ/mol
Beads per interaction: 60 beads/interaction
base pairs per interaction: 120 000 bp/interaction
Region: chr7:141250000-141850000
Region length: 600 001 bp
Effective resolution: 2000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 35 127
  • 96 113
  • 96 146
  • 136 200
  • 142 200
Interactions 
  • chr7	141319306	141319888	chr7	141502227	141502862	7
  • chr7	141439952	141440562	chr7	141475636	141476247	4
  • chr7	141440408	141441058	chr7	141540288	141540817	4
  • chr7	141521373	141522026	chr7	141649615	141650144	4
  • chr7	141532718	141534198	chr7	141648797	141650013	6
Interactive structure preview
genome coordinates
141250000
141370000
141490000
141610000
141730000
141850000
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model coordinates
Distance map distance map