Task

chr15:10000000-17000000

353e350e-c465-4bf7-8142-0dc8a10d4a6f
Submitted at: June 26, 2024, 10:55 a.m.
Task status: Finished
Number of beads: 7000
Number of restraints: 15
Initial Structure type: pure random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 5171.978 kJ/mol
Beads per interaction: 466.667 beads/interaction
base pairs per interaction: 466 667 bp/interaction
Region: chr15:10000000-17000000
Region length: 7 000 001 bp
Effective resolution: 1000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 103 203
  • 103 303
  • 103 403
  • 103 503
  • 103 603
  • 203 303
  • 203 403
  • 203 503
  • 203 603
  • 303 403
  • 303 503
  • 303 603
  • 403 503
  • 403 603
  • 503 603
Interactions 
  • chr15	10100000	10105000	chr15	10200000	10205000	5
  • chr15	10100000	10105000	chr15	10300000	10305000	5
  • chr15	10100000	10105000	chr15	10400000	10405000	5
  • chr15	10100000	10105000	chr15	10500000	10505000	5
  • chr15	10100000	10105000	chr15	10600000	10605000	5
  • chr15	10200000	10205000	chr15	10300000	10305000	5
  • chr15	10200000	10205000	chr15	10400000	10405000	5
  • chr15	10200000	10205000	chr15	10500000	10505000	5
  • chr15	10200000	10205000	chr15	10600000	10605000	5
  • chr15	10300000	10305000	chr15	10400000	10405000	5
  • chr15	10300000	10305000	chr15	10500000	10505000	5
  • chr15	10300000	10305000	chr15	10600000	10605000	5
  • chr15	10400000	10405000	chr15	10500000	10505000	5
  • chr15	10400000	10405000	chr15	10600000	10605000	5
  • chr15	10500000	10505000	chr15	10600000	10605000	5
Interactive structure preview
genome coordinates
10000000
11400000
12800000
14200000
15600000
17000000
1
700
1400
2100
2800
3500
4200
4900
5600
6300
7000
model coordinates
Distance map distance map