Task

chr11:60118226-61192394

36afd94f-fc18-4166-bca0-5407aa80d4ed
Submitted at: June 24, 2024, 12:17 p.m.
Task status: Finished
Number of beads: 1074
Number of restraints: 15
Initial Structure type: pure random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 625.612 kJ/mol
Beads per interaction: 71.600 beads/interaction
base pairs per interaction: 71 611 bp/interaction
Region: chr11:60118226-61192394
Region length: 1 074 169 bp
Effective resolution: 1000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 14 135
  • 14 268
  • 352 537
  • 482 537
  • 482 548
  • 482 780
  • 482 838
  • 594 838
  • 407 426
  • 838 905
  • 135 285
  • 352 482
  • 426 594
  • 482 905
  • 905 987
Interactions 
  • chr11	60128236	60135071	chr11	60249285	60256076	433
  • chr11	60128236	60135071	chr11	60383997	60388360	40
  • chr11	60467976	60470733	chr11	60654382	60656019	5
  • chr11	60597394	60601423	chr11	60654382	60656019	56
  • chr11	60597394	60601423	chr11	60664087	60667727	59
  • chr11	60597394	60601423	chr11	60895432	60900077	73
  • chr11	60597394	60601423	chr11	60952476	60958359	60
  • chr11	60709989	60713751	chr11	60952476	60958359	5
  • chr11	60523922	60524845	chr11	60541914	60544784	9
  • chr11	60952476	60958359	chr11	61020988	61023761	4
  • chr11	60249285	60256076	chr11	60400576	60404506	49
  • chr11	60467976	60470733	chr11	60597394	60601423	4
  • chr11	60541914	60544784	chr11	60709989	60713751	4
  • chr11	60597394	60601423	chr11	61020988	61023761	5
  • chr11	61020988	61023761	chr11	61099331	61109504	7
Interactive structure preview
genome coordinates
60118226
60333059
60547893
60762726
60977560
61192394
1
108
215
322
430
537
644
752
859
966
1074
model coordinates
Distance map distance map