Task

chr15:10000000-10700000

4ffd995b-1a0f-48fa-a9b2-0fea92c1471e
Submitted at: June 26, 2024, 10:58 a.m.
Task status: Error
Number of beads: 7000
Number of restraints: 10
Initial Structure type: pure random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Beads per interaction: 700 beads/interaction
base pairs per interaction: 70 000 bp/interaction
Region: chr15:10000000-10700000
Region length: 700 001 bp
Effective resolution: 100 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 1026 3026
  • 1026 4026
  • 1026 5026
  • 1026 6026
  • 2026 4026
  • 2026 5026
  • 2026 6026
  • 3026 5026
  • 3026 6026
  • 4026 6026
Interactions 
  • chr15	10100000	10105000	chr15	10300000	10305000	5
  • chr15	10100000	10105000	chr15	10400000	10405000	5
  • chr15	10100000	10105000	chr15	10500000	10505000	5
  • chr15	10100000	10105000	chr15	10600000	10605000	5
  • chr15	10200000	10205000	chr15	10400000	10405000	5
  • chr15	10200000	10205000	chr15	10500000	10505000	5
  • chr15	10200000	10205000	chr15	10600000	10605000	5
  • chr15	10300000	10305000	chr15	10500000	10505000	5
  • chr15	10300000	10305000	chr15	10600000	10605000	5
  • chr15	10400000	10405000	chr15	10600000	10605000	5