Task

Example - Genomic coordinates

50032b47-8345-4046-94a5-fac4ff911439

Submitted at:	Aug. 4, 2024, 6:37 a.m.
Task status:	Error
Number of beads:	13634
Number of restraints:	46
Initial Structure type:	self-avoiding random walk
Excluded volume:	True
Refinement:	No
Stiffness:	10.0 kJ/mol/rad²
Beads per interaction:	296.391 beads/interaction
base pairs per interaction:	592 823 bp/interaction
Region:	chr10:172796-27442653
Region length:	27 269 858 bp
Effective resolution:	2000 bp/bead
Title: Up to 255 characters Initial structure type: line circle self-avoiding random walk pure random walk baseball Stiffness: Values between 0 and 100 are suitable for most cases. Spherical container: Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint. Refinement: May significantly extend computation time. Excluded volume: Check to include ev term Number of beads: The limits are: 5 - 2000 Resolution: Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region Restraints: Region: Genomic region in format chrN:xxx-yyy Interactions: chr10 172796 174508 chr10 181742 183742 34 chr10 173993 174493 chr10 15130581 15131085 3 chr10 181601 182107 chr10 7227613 7228113 3 chr10 181830 182730 chr10 228218 229361 4 chr10 181822 183736 chr10 515843 517340 7 chr10 182806 183736 chr10 227934 229031 5 chr10 228018 228931 chr10 427457 428964 4 chr10 228231 229028 chr10 1033973 1034731 4 chr10 228272 229019 chr10 499549 500968 3 chr10 228282 229158 chr10 531146 532357 5 chr10 228520 229023 chr10 27442153 27442653 3 chr10 227840 229704 chr10 515835 517057 12 chr10 228276 229359 chr10 370111 370708 4 chr10 228289 229355 chr10 310706 311797 4 chr10 228286 229361 chr10 397548 398692 9 chr10 228289 229414 chr10 557123 557644 4 chr10 228109 229711 chr10 266631 267551 7 chr10 228510 229411 chr10 379357 380175 8 chr10 228701 229361 chr10 329795 330704 3 chr10 228523 229713 chr10 274366 275274 4 chr10 228853 229414 chr10 1094985 1095921 3 chr10 228481 229982 chr10 496028 497417 5 chr10 267038 267685 chr10 546502 547022 3 chr10 309923 311946 chr10 327970 330704 15 chr10 310706 311324 chr10 370213 370852 3 chr10 327981 328970 chr10 397773 399147 4 chr10 328778 329851 chr10 496534 497594 3 chr10 329360 329882 chr10 374942 375746 3 chr10 329189 330698 chr10 379139 380289 11 chr10 329379 330652 chr10 360564 361543 5 chr10 329352 330704 chr10 397488 398688 5 chr10 329400 330701 chr10 515835 517262 9 chr10 329425 330720 chr10 427421 428112 4 chr10 359421 362192 chr10 378835 380813 19 chr10 360323 361484 chr10 369423 370669 5 chr10 360619 361493 chr10 374472 375930 7 chr10 360623 361496 chr10 397811 398683 6 chr10 360622 361986 chr10 546932 547756 4 chr10 369016 371097 chr10 378966 380262 11 chr10 369909 370714 chr10 496249 497043 3 chr10 374500 376476 chr10 515836 517158 5 chr10 378966 379896 chr10 496531 497645 7 chr10 378987 379899 chr10 427430 428516 11 chr10 379356 379929 chr10 531151 532938 5 chr10 379155 380283 chr10 515664 517299 7 chr10 378974 380600 chr10 396975 398727 28 BEDPE format.
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Initial structure Pseudo bonds for UCSF Chimera
Arc height is proportional to it's length.
Restraints 1 5 1 7480 5 3528 5 28 5 172 6 28 28 128 28 431 28 164 28 180 28 13635 28 172 29 99 29 70 29 113 29 193 29 48 29 104 29 79 29 52 29 462 29 162 48 187 70 79 70 99 78 113 79 163 79 102 79 104 79 95 79 113 79 172 79 128 95 104 95 99 95 102 95 113 95 188 99 104 99 162 102 172 104 163 104 128 104 180 104 172 104 113
Interactions chr10 172796 174508 chr10 181742 183742 34 chr10 173993 174493 chr10 15130581 15131085 3 chr10 181601 182107 chr10 7227613 7228113 3 chr10 181830 182730 chr10 228218 229361 4 chr10 181822 183736 chr10 515843 517340 7 chr10 182806 183736 chr10 227934 229031 5 chr10 228018 228931 chr10 427457 428964 4 chr10 228231 229028 chr10 1033973 1034731 4 chr10 228272 229019 chr10 499549 500968 3 chr10 228282 229158 chr10 531146 532357 5 chr10 228520 229023 chr10 27442153 27442653 3 chr10 227840 229704 chr10 515835 517057 12 chr10 228276 229359 chr10 370111 370708 4 chr10 228289 229355 chr10 310706 311797 4 chr10 228286 229361 chr10 397548 398692 9 chr10 228289 229414 chr10 557123 557644 4 chr10 228109 229711 chr10 266631 267551 7 chr10 228510 229411 chr10 379357 380175 8 chr10 228701 229361 chr10 329795 330704 3 chr10 228523 229713 chr10 274366 275274 4 chr10 228853 229414 chr10 1094985 1095921 3 chr10 228481 229982 chr10 496028 497417 5 chr10 267038 267685 chr10 546502 547022 3 chr10 309923 311946 chr10 327970 330704 15 chr10 310706 311324 chr10 370213 370852 3 chr10 327981 328970 chr10 397773 399147 4 chr10 328778 329851 chr10 496534 497594 3 chr10 329360 329882 chr10 374942 375746 3 chr10 329189 330698 chr10 379139 380289 11 chr10 329379 330652 chr10 360564 361543 5 chr10 329352 330704 chr10 397488 398688 5 chr10 329400 330701 chr10 515835 517262 9 chr10 329425 330720 chr10 427421 428112 4 chr10 359421 362192 chr10 378835 380813 19 chr10 360323 361484 chr10 369423 370669 5 chr10 360619 361493 chr10 374472 375930 7 chr10 360623 361496 chr10 397811 398683 6 chr10 360622 361986 chr10 546932 547756 4 chr10 369016 371097 chr10 378966 380262 11 chr10 369909 370714 chr10 496249 497043 3 chr10 374500 376476 chr10 515836 517158 5 chr10 378966 379896 chr10 496531 497645 7 chr10 378987 379899 chr10 427430 428516 11 chr10 379356 379929 chr10 531151 532938 5 chr10 379155 380283 chr10 515664 517299 7 chr10 378974 380600 chr10 396975 398727 28