Task

Example - Genomic coordinates

64f15237-a148-40a9-b4f9-fc17a35b742e
Submitted at: Aug. 4, 2024, 6:34 a.m.
Task status: Error
Number of beads: 13634
Number of restraints: 17
Initial Structure type: self-avoiding random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Beads per interaction: 802 beads/interaction
base pairs per interaction: 1 604 109 bp/interaction
Region: chr10:172796-27442653
Region length: 27 269 858 bp
Effective resolution: 2000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 1 5
  • 1 7480
  • 5 3528
  • 5 28
  • 5 172
  • 6 28
  • 28 128
  • 28 431
  • 28 164
  • 28 180
  • 28 13635
  • 28 172
  • 29 99
  • 29 70
  • 29 113
  • 29 193
  • 29 48
Interactions 
  • chr10	172796	174508	chr10	181742	183742	34
  • chr10	173993	174493	chr10	15130581	15131085	3
  • chr10	181601	182107	chr10	7227613	7228113	3
  • chr10	181830	182730	chr10	228218	229361	4
  • chr10	181822	183736	chr10	515843	517340	7
  • chr10	182806	183736	chr10	227934	229031	5
  • chr10	228018	228931	chr10	427457	428964	4
  • chr10	228231	229028	chr10	1033973	1034731	4
  • chr10	228272	229019	chr10	499549	500968	3
  • chr10	228282	229158	chr10	531146	532357	5
  • chr10	228520	229023	chr10	27442153	27442653	3
  • chr10	227840	229704	chr10	515835	517057	12
  • chr10	228276	229359	chr10	370111	370708	4
  • chr10	228289	229355	chr10	310706	311797	4
  • chr10	228286	229361	chr10	397548	398692	9
  • chr10	228289	229414	chr10	557123	557644	4
  • chr10	228109	229711	chr10	266631	267551	7