Task

Example - Genomic coordinates

6e3c8198-d2de-4b37-8690-b6141de8a496
Submitted at: Feb. 23, 2024, 8:30 a.m.
Task status: Finished
Number of beads: 600
Number of restraints: 18
Initial Structure type: self-avoiding random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 251.390 kJ/mol
Beads per interaction: 33.333 beads/interaction
base pairs per interaction: 33 333 bp/interaction
Region: chr7:141250000-141850000
Region length: 600 001 bp
Effective resolution: 1000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 70 253
  • 191 226
  • 191 291
  • 272 400
  • 284 400
  • 284 401
  • 285 401
  • 287 401
  • 406 444
  • 405 461
  • 408 461
  • 405 488
  • 407 489
  • 405 536
  • 408 543
  • 452 489
  • 488 537
  • 506 537
Interactions 
  • chr7	141319306	141319888	chr7	141502227	141502862	7
  • chr7	141439952	141440562	chr7	141475636	141476247	4
  • chr7	141440408	141441058	chr7	141540288	141540817	4
  • chr7	141521373	141522026	chr7	141649615	141650144	4
  • chr7	141532718	141534198	chr7	141648797	141650013	6
  • chr7	141532773	141533502	chr7	141650079	141651001	4
  • chr7	141533511	141534645	chr7	141650062	141651061	4
  • chr7	141535611	141537022	chr7	141649504	141650652	5
  • chr7	141655299	141655869	chr7	141693222	141693832	5
  • chr7	141653441	141654793	chr7	141709665	141711118	9
  • chr7	141656215	141657786	chr7	141710387	141711077	4
  • chr7	141653134	141655804	chr7	141736601	141739391	40
  • chr7	141655948	141657565	chr7	141737637	141738765	4
  • chr7	141652717	141656457	chr7	141783888	141787090	43
  • chr7	141656940	141657491	chr7	141792255	141792903	8
  • chr7	141701006	141702162	chr7	141737490	141738745	9
  • chr7	141737478	141738238	chr7	141785355	141786856	5
  • chr7	141754144	141756309	chr7	141785377	141787018	8
Interactive structure preview
genome coordinates
141250000
141370000
141490000
141610000
141730000
141850000
1
60
120
180
240
300
360
420
480
540
600
model coordinates
Distance map distance map