Task

chr9:118353331-119424379​

7924e3e6-a5ef-46d0-b1bd-10b7976e9dfc
Submitted at: June 24, 2024, 12:12 p.m.
Task status: Finished
Number of beads: 1071
Number of restraints: 11
Initial Structure type: pure random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 642.490 kJ/mol
Beads per interaction: 97.364 beads/interaction
base pairs per interaction: 97 368 bp/interaction
Region: chr9:118353331-119424379
Region length: 1 071 049 bp
Effective resolution: 1000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 1 982
  • 1 1057
  • 1 1071
  • 4 904
  • 4 1057
  • 293 1057
  • 293 1071
  • 560 1057
  • 572 1057
  • 904 1071
  • 560 572
Interactions 
  • chr9	118353331	118354216	chr9	119333348	119335557	4
  • chr9	118353331	118354216	chr9	119408919	119410240	5
  • chr9	118353331	118354216	chr9	119422559	119424379	6
  • chr9	118355332	118358172	chr9	119256183	119258133	4
  • chr9	118355332	118358172	chr9	119408919	119410240	4
  • chr9	118645379	118646625	chr9	119408919	119410240	4
  • chr9	118645379	118646625	chr9	119422559	119424379	9
  • chr9	118911436	118913722	chr9	119408919	119410240	8
  • chr9	118924055	118926601	chr9	119408919	119410240	9
  • chr9	119256183	119258133	chr9	119422559	119424379	8
  • chr9	118911436	118913722	chr9	118924055	118926601	4
Interactive structure preview
genome coordinates
118353331
118567540
118781750
118995959
119210169
119424379
1
108
215
322
429
536
643
750
857
964
1071
model coordinates
Distance map distance map