Task

Title: Up to 255 characters

Initial structure type:

Stiffness: Values between 0 and 100 are suitable for most cases.

Spherical container: Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

Refinement: May significantly extend computation time.

Excluded volume: Check to include ev term

Number of beads: The limits are: 5 - 2000

Resolution: Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Restraints:

Region: Genomic region in format chrN:xxx-yyy

Interactions: chr8 95566237 95566866 chr8 95586007 95586573 3 chr8 95222749 95223477 chr8 95251084 95251424 2 chr8 94987423 94987840 chr8 95586546 95586635 2 chr8 95003668 95003971 chr8 95199907 95200652 2 chr8 94828969 94829622 chr8 94973353 94973515 2 chr8 95514756 95514979 chr8 95586460 95586625 2 chr8 95092000 95092513 chr8 95163641 95164118 2 chr8 94725397 94726069 chr8 94973005 94973481 2 chr8 94708241 94709277 chr8 94987326 94987681 3 chr8 95091725 95092184 chr8 95157266 95157498 2 chr8 95007029 95007295 chr8 95090184 95090690 2 chr8 94582526 94583054 chr8 94653278 94654191 3 chr8 94924536 94924946 chr8 94973317 94973447 2 chr8 94577735 94578242 chr8 94973140 94973447 2 chr8 94577855 94578118 chr8 94652485 94653044 2 chr8 95092070 95092244 chr8 95220297 95220740 2 chr8 95133610 95133696 chr8 95154358 95154535 2 chr8 95396670 95397466 chr8 95586474 95586642 3 chr8 95003496 95004225 chr8 95093249 95093400 3 chr8 94704716 94705130 chr8 94973348 94973562 3 chr8 94836215 94836443 chr8 94974708 94975089 3 chr8 94905233 94905388 chr8 94978448 94978533 2 chr8 95006658 95007215 chr8 95132422 95132934 3 chr8 94716497 94716657 chr8 94834789 94835421 2 chr8 94834476 94834758 chr8 94993689 94993897 2 chr8 95480972 95481522 chr8 95586584 95586711 2 chr8 94711783 94711962 chr8 94998235 94998535 2 chr8 94839709 94840094 chr8 94987450 94987611 2 chr8 95007001 95007207 chr8 95093816 95094140 2 chr8 94832833 94833085 chr8 94987468 94987983 3 chr8 95274411 95274577 chr8 95369356 95369487 2 chr8 94999782 95000414 chr8 95586477 95586636 2 chr8 94987379 94987650 chr8 95370017 95370202 2 chr8 94706286 94706563 chr8 95586539 95586656 2 chr8 94703580 94704118 chr8 94987413 94987579 2 chr8 95565857 95566489 chr8 95581146 95581509 2 chr8 95284710 95285472 chr8 95295980 95296087 2 chr8 95087767 95088178 chr8 95370120 95370652 2 chr8 95093436 95093652 chr8 95585889 95586335 2 chr8 94986968 94987538 chr8 95091877 95092244 2 chr8 95006760 95007303 chr8 95199679 95200429 2 chr8 94577731 94577882 chr8 94972099 94972344 2 chr8 94838653 94839322 chr8 94973317 94973545 2 chr8 94580953 94581104 chr8 94987147 94987613 2 chr8 95283221 95283588 chr8 95369239 95370034 2 chr8 95094713 95094867 chr8 95284615 95284823 2 chr8 95209887 95210302 chr8 95284446 95284597 2 chr8 94995179 94995472 chr8 95006874 95007216 2 chr8 94987039 94987561 chr8 94995422 94996003 3 chr8 95084094 95084407 chr8 95243668 95244108 2 chr8 94706044 94706704 chr8 94714571 94715236 2 chr8 94708924 94709343 chr8 94973211 94973395 2 chr8 95002038 95002564 chr8 95586556 95586707 2 chr8 95111225 95111791 chr8 95369905 95370291 2 chr8 94577811 94577914 chr8 95002717 95002910 2 chr8 95232475 95232776 chr8 95284480 95284780 2 chr8 95094791 95095290 chr8 95366652 95366951 3 chr8 95089115 95089313 chr8 95284489 95285077 3 chr8 94708485 94709158 chr8 94985559 94985986 2 chr8 95411836 95412364 chr8 95462123 95462533 2 chr8 95447934 95448760 chr8 95456777 95457105 3 chr8 95092088 95092213 chr8 95487259 95487476 2 chr8 95218236 95218477 chr8 95339225 95339853 2 chr8 94579514 94579949 chr8 94973247 94973398 2 chr8 94706799 94707228 chr8 94969029 94969276 2 chr8 94816060 94816735 chr8 94987493 94987621 2 chr8 95007785 95007936 chr8 95372303 95372434 2 chr8 95070914 95071009 chr8 95586504 95586792 2 chr8 95091924 95092261 chr8 95579797 95580087 2 chr8 94577713 94577962 chr8 94604080 94604804 2 chr8 94834342 94834730 chr8 95369268 95369451 2 chr8 95090742 95090907 chr8 95367812 95368182 2 chr8 95369501 95369688 chr8 95463294 95463616 2 chr8 95095227 95095407 chr8 95370213 95370920 2 chr8 94706543 94706743 chr8 94833300 94833668 2 chr8 95007942 95008566 chr8 95369380 95369669 3 chr8 94706356 94706637 chr8 94994427 94994748 2 chr8 95085062 95085165 chr8 95099472 95099623 2 chr8 95004977 95005449 chr8 95367985 95368196 2 chr8 94707197 94707567 chr8 94995316 94995463 2 chr8 94833742 94834002 chr8 94989065 94989453 2 chr8 94609146 94609324 chr8 94617864 94618318 2 chr8 95218548 95219063 chr8 95283980 95284650 2 chr8 94834581 94834732 chr8 94896683 94897111 2 chr8 94774444 94774567 chr8 94973245 94973509 2 chr8 95092068 95092167 chr8 95365213 95365846 2 chr8 94711123 94712486 chr8 94834634 94834779 3 chr8 94948138 94948290 chr8 94987552 94987652 2 chr8 94577916 94578067 chr8 94995425 94995576 2 chr8 94577785 94578154 chr8 94991503 94992092 2 chr8 95037981 95038018 chr8 95555871 95556052 2 chr8 94995248 94995819 chr8 95586272 95586603 2 chr8 94973181 94973466 chr8 94989096 94989686 2 chr8 94835195 94835358 chr8 95370191 95370718 2 chr8 94815504 94815989 chr8 94850512 94851022 2 chr8 94712632 94712814 chr8 94987322 94987612 2 chr8 94706394 94706606 chr8 94969706 94970182 3 chr8 95360255 95360418 chr8 95369578 95369680 2 chr8 94706621 94706956 chr8 94992904 94993033 2 chr8 95092101 95092157 chr8 95101291 95101351 2 chr8 94706355 94706560 chr8 94831232 94831376 2 chr8 94987466 94987587 chr8 95093120 95093439 2 chr8 95092298 95092831 chr8 95366731 95367149 3 chr8 94995310 94995868 chr8 95091590 95092250 3 chr8 94720374 94721090 chr8 94987485 94987656 2 chr8 94991077 94991124 chr8 95092310 95092382 2 chr8 95000335 95000621 chr8 95370225 95370409 2 chr8 95218593 95219029 chr8 95229688 95229894 2 chr8 94834627 94835433 chr8 94852005 94852724 3 chr8 95447225 95447698 chr8 95458090 95458587 2 chr8 94969267 94969764 chr8 94978083 94978653 2 chr8 95431974 95432125 chr8 95567043 95567130 2 chr8 94653935 94654230 chr8 94973560 94973657 2 chr8 95453299 95453650 chr8 95466759 95466975 2 chr8 94942685 94942748 chr8 94973369 94973446 2 chr8 95003667 95004159 chr8 95132197 95132728 3 chr8 94698656 94699216 chr8 94972907 94973422 2 chr8 95247936 95248087 chr8 95284484 95284782 2 chr8 94839524 94839847 chr8 94971554 94971789 2 chr8 94706313 94706617 chr8 94990007 94990452 3 chr8 94987423 94987564 chr8 95003573 95003770 2 chr8 94929788 94930006 chr8 94972947 94973469 2 chr8 95089933 95090465 chr8 95586483 95586712 3 chr8 94995398 94995516 chr8 95401430 95402058 2 chr8 94995421 94995727 chr8 95010651 95010790 2 chr8 94986333 94986495 chr8 94995369 94995469 2 chr8 95092174 95092379 chr8 95348693 95348874 2 chr8 94988886 94989243 chr8 95006901 95007103 3 chr8 94973180 94973578 chr8 94983801 94984459 3 chr8 95231161 95231418 chr8 95274105 95274748 2 chr8 95088807 95089170 chr8 95369398 95370107 3 chr8 95090118 95090411 chr8 95280822 95281204 2 chr8 94706066 94706567 chr8 95091868 95092235 2 chr8 94576876 94579235 chr8 94984363 94989455 21 chr8 94703669 94708260 chr8 94969682 94976203 95 chr8 94703669 94708260 chr8 94984363 94989455 75 chr8 94703669 94708260 chr8 94994774 94995996 7 chr8 94832242 94837891 chr8 94969682 94976203 186 chr8 94832242 94837891 chr8 94984363 94989455 66 chr8 94832242 94837891 chr8 94994774 94995996 7 chr8 95002440 95004221 chr8 95282182 95286630 13 chr8 95002440 95004221 chr8 95585636 95587549 8 chr8 95005466 95007312 chr8 95282182 95286630 8 chr8 95005466 95007312 chr8 95585636 95587549 8 chr8 95089673 95094486 chr8 95282182 95286630 70 chr8 95089673 95094486 chr8 95585636 95587549 16 chr8 94969682 94976203 chr8 94984363 94989455 5 chr8 94984363 94989455 chr8 95282182 95286630 4 chr8 94703669 94708260 chr8 94832242 94837891 17 chr8 95002440 95004221 chr8 95089673 95094486 4 chr8 95005466 95007312 chr8 95089673 95094486 4 BEDPE format.