Task

Title: Up to 255 characters

Initial structure type:

Stiffness: Values between 0 and 100 are suitable for most cases.

Spherical container: Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

Refinement: May significantly extend computation time.

Excluded volume: Check to include ev term

Number of beads: The limits are: 5 - 2000

Resolution: Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Restraints:

Region: Genomic region in format chrN:xxx-yyy

Interactions: chr10 128921 129469 chr10 1040933 1041584 3 chr10 856847 857400 chr10 1076435 1077087 4 chr10 936422 937251 chr10 1041778 1042940 3 chr10 942326 942979 chr10 1052354 1052964 4 chr10 972439 976067 chr10 985405 988873 23 chr10 973962 974872 chr10 1036452 1037208 3 chr10 1035843 1038700 chr10 1047155 1050769 16 chr10 1044231 1046192 chr10 1054580 1057072 9 chr10 1211154 1211745 chr10 1973827 1974470 6 chr10 1727282 1731004 chr10 1737181 1740517 39 chr10 1873272 1874263 chr10 2448651 2449489 5 chr10 2927684 2928293 chr10 3293074 3293726 5 chr10 2931692 2932678 chr10 3039990 3040687 8 chr10 3054845 3055620 chr10 3063246 3064108 3 chr10 3366095 3366615 chr10 4529020 4529671 3 chr10 3781312 3786108 chr10 3872522 3877925 51 chr10 3782569 3786258 chr10 3850561 3853974 32 chr10 3784882 3786108 chr10 3892646 3894176 5 chr10 3805096 3806159 chr10 3876036 3877729 5 chr10 3809976 3811119 chr10 3867929 3868992 6 chr10 3835517 3837302 chr10 3847364 3850741 12 chr10 3840976 3841912 chr10 3850483 3851487 3 chr10 3864599 3865252 chr10 4011178 4011744 3 chr10 3864600 3867323 chr10 3874169 3877478 30 chr10 3874565 3878195 chr10 3891423 3894176 22 chr10 3874565 3875636 chr10 3898535 3899759 3 chr10 3901500 3902050 chr10 79149045 79149861 3 chr10 4003238 4003766 chr10 100029397 100030049 7 chr10 4746659 4747255 chr10 13611133 13611743 3 chr10 5510188 5510759 chr10 5527672 5528322 5 chr10 5655077 5655792 chr10 5669697 5670239 3 chr10 5687827 5688816 chr10 5868993 5869591 8 chr10 5709996 5710519 chr10 5781060 5781701 6 chr10 5711635 5712200 chr10 5754443 5755098 14 chr10 5797526 5798150 chr10 5888335 5888859 3 chr10 5802339 5803233 chr10 5810851 5811427 3 chr10 5809531 5811393 chr10 5851640 5853156 10 chr10 5813325 5814576 chr10 5868993 5869796 3 chr10 5813789 5814946 chr10 5872600 5873600 4 chr10 5816703 5819112 chr10 5843036 5845652 15 chr10 5819735 5821511 chr10 5839834 5841195 7 chr10 5842867 5844196 chr10 5866927 5868282 4 chr10 5850329 5851144 chr10 5861999 5863397 7 chr10 5859334 5859946 chr10 5889555 5890160 5 chr10 5882225 5882869 chr10 6455150 6455731 3 chr10 6022792 6023402 chr10 6272405 6273058 6 chr10 6043327 6044358 chr10 6053045 6054632 6 chr10 6050965 6051497 chr10 6704149 6704774 3 chr10 6135737 6136826 chr10 6163382 6164124 4 chr10 6136591 6137779 chr10 6198424 6199525 3 BEDPE format.