Task

chr20:22333053-23448334

abb68761-6bfc-4e37-9209-5d42ff8e63cc
Submitted at: June 24, 2024, 9:03 a.m.
Task status: Finished
Number of beads: 1115
Number of restraints: 8
Initial Structure type: pure random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 624.029 kJ/mol
Beads per interaction: 139.375 beads/interaction
base pairs per interaction: 139 410 bp/interaction
Region: chr20:22333053-23448334
Region length: 1 115 282 bp
Effective resolution: 1000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 340 887
  • 998 1089
  • 338 989
  • 500 884
  • 340 624
  • 699 989
  • 670 884
  • 235 332
Interactions 
  • chr20	22671940	22672475	chr20	23219257	23219903	3
  • chr20	23330086	23330643	chr20	23421483	23422569	3
  • chr20	22670084	22670534	chr20	23321363	23322002	3
  • chr20	22832103	22832533	chr20	23216021	23216311	3
  • chr20	22672237	22672831	chr20	22956274	22957012	3
  • chr20	23031388	23031702	chr20	23321228	23321970	3
  • chr20	23002187	23002496	chr20	23216153	23216475	3
  • chr20	22566157	22568805	chr20	22662338	22666396	5
Interactive structure preview
genome coordinates
22333053
22556109
22779165
23002221
23225277
23448334
1
112
223
335
446
558
669
780
892
1003
1115
model coordinates
Distance map distance map