Task

Example - Genomic coordinates

ae7677d3-91a6-46af-b753-89adead90f5e
Submitted at: June 20, 2024, 8:27 a.m.
Task status: Finished
Number of beads: 424
Number of restraints: 5
Initial Structure type: self-avoiding random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 164.710 kJ/mol
Beads per interaction: 84.800 beads/interaction
base pairs per interaction: 169 637 bp/interaction
Region: chr1:174997058-175845240
Region length: 848 183 bp
Effective resolution: 2000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 2 204
  • 59 204
  • 49 59
  • 359 365
  • 2 59
Interactions 
  • chr1	174997058	175002023	chr1	175402647	175404628	4
  • chr1	175112326	175116976	chr1	175402647	175404628	8
  • chr1	175092921	175095392	chr1	175112326	175116976	5
  • chr1	175712271	175714311	chr1	175725974	175727628	7
  • chr1	174997058	175002023	chr1	175112326	175116976	69
Interactive structure preview
genome coordinates
174997058
175166694
175336330
175505967
175675603
175845240
1
43
85
127
170
212
254
297
339
381
424
model coordinates
Distance map distance map