Task

Example - Genomic coordinates

bc4cf365-2968-4a62-b3dd-09f7575d3728
Submitted at: July 29, 2024, 9:17 a.m.
Task status: Finished
Number of beads: 300
Number of restraints: 18
Initial Structure type: self-avoiding random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 145.518 kJ/mol
Beads per interaction: 16.667 beads/interaction
base pairs per interaction: 33 333 bp/interaction
Region: chr7:141250000-141850000
Region length: 600 001 bp
Effective resolution: 2000 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 35 127
  • 96 113
  • 96 146
  • 136 200
  • 142 200
  • 142 201
  • 143 201
  • 144 201
  • 203 222
  • 203 231
  • 204 231
  • 203 244
  • 204 245
  • 203 268
  • 204 272
  • 226 245
  • 244 269
  • 253 269
Interactions 
  • chr7	141319306	141319888	chr7	141502227	141502862	7
  • chr7	141439952	141440562	chr7	141475636	141476247	4
  • chr7	141440408	141441058	chr7	141540288	141540817	4
  • chr7	141521373	141522026	chr7	141649615	141650144	4
  • chr7	141532718	141534198	chr7	141648797	141650013	6
  • chr7	141532773	141533502	chr7	141650079	141651001	4
  • chr7	141533511	141534645	chr7	141650062	141651061	4
  • chr7	141535611	141537022	chr7	141649504	141650652	5
  • chr7	141655299	141655869	chr7	141693222	141693832	5
  • chr7	141653441	141654793	chr7	141709665	141711118	9
  • chr7	141656215	141657786	chr7	141710387	141711077	4
  • chr7	141653134	141655804	chr7	141736601	141739391	40
  • chr7	141655948	141657565	chr7	141737637	141738765	4
  • chr7	141652717	141656457	chr7	141783888	141787090	43
  • chr7	141656940	141657491	chr7	141792255	141792903	8
  • chr7	141701006	141702162	chr7	141737490	141738745	9
  • chr7	141737478	141738238	chr7	141785355	141786856	5
  • chr7	141754144	141756309	chr7	141785377	141787018	8
Interactive structure preview
genome coordinates
141250000
141370000
141490000
141610000
141730000
141850000
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model coordinates
Distance map distance map