Task

Example - Loop types

c6708206-118d-4b38-a43f-c3aaa12c8aa2

Submitted at:	Aug. 2, 2024, 8:37 p.m.
Task status:	Finished
Number of beads:	90
Number of restraints:	2
Initial Structure type:	line
Excluded volume:	True
Refinement:	No
Stiffness:	10.0 kJ/mol/rad²
Structure energy:	20.139 kJ/mol
Beads per interaction:	45 beads/interaction
Spherical container radius:	100.0 σ
Title: Up to 255 characters Initial structure type: line circle self-avoiding random walk pure random walk baseball Stiffness: Values between 0 and 100 are suitable for most cases. Spherical container: Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint. Refinement: May significantly extend computation time. Excluded volume: Check to include ev term Number of beads: The limits are: 5 - 2000 Resolution: Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region Restraints: 10 40 >> 50 80 >< Region: Genomic region in format chrN:xxx-yyy Interactions: BEDPE format.
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Result structure Initial structure Pseudo bonds for UCSF Chimera
Arc height is proportional to it's length.
Restraints 10 40 C 50 80 H

Interactive structure preview

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9

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45

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90

model coordinates

Distance map

distance map