Task

chr8:94576876-95587549

fd234016-9c48-40d8-b617-10258a839551
Submitted at: June 24, 2024, 12:28 p.m.
Task status: Finished
Number of beads: 1010
Number of restraints: 13
Initial Structure type: pure random walk
Excluded volume: True
Refinement: No
Stiffness: 10.0 kJ/mol/rad2
Structure energy: 464.534 kJ/mol
Beads per interaction: 77.692 beads/interaction
base pairs per interaction: 77 744 bp/interaction
Region: chr8:94576876-95587549
Region length: 1 010 674 bp
Effective resolution: 1001 bp/bead

Up to 255 characters

Values between 0 and 100 are suitable for most cases.

Diameter of container in σ (bead diameter) units. Leave empty for modelling without this constraint.

May significantly extend computation time.

Check to include ev term

The limits are: 5 - 2000

Values between 1000 - 100 000 are usually reasonable and strongly depend on size of modelling region

Genomic region in format chrN:xxx-yyy

BEDPE format.

Downloads
arc diagram
Arc height is proportional to it's length.
Restraints
  • 130 397
  • 130 411
  • 130 419
  • 259 411
  • 259 419
  • 427 1010
  • 430 708
  • 430 1010
  • 516 708
  • 397 411
  • 411 708
  • 427 516
  • 430 516
Interactions 
  • chr8	94703669	94708260	chr8	94969682	94976203	95
  • chr8	94703669	94708260	chr8	94984363	94989455	75
  • chr8	94703669	94708260	chr8	94994774	94995996	7
  • chr8	94832242	94837891	chr8	94984363	94989455	66
  • chr8	94832242	94837891	chr8	94994774	94995996	7
  • chr8	95002440	95004221	chr8	95585636	95587549	8
  • chr8	95005466	95007312	chr8	95282182	95286630	8
  • chr8	95005466	95007312	chr8	95585636	95587549	8
  • chr8	95089673	95094486	chr8	95282182	95286630	70
  • chr8	94969682	94976203	chr8	94984363	94989455	5
  • chr8	94984363	94989455	chr8	95282182	95286630	4
  • chr8	95002440	95004221	chr8	95089673	95094486	4
  • chr8	95005466	95007312	chr8	95089673	95094486	4
Interactive structure preview
genome coordinates
94576876
94779010
94981145
95183279
95385414
95587549
1
101
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404
505
606
707
808
909
1010
model coordinates
Distance map distance map